Index

_

_activate_worker() (pylbo.automation.runner.LegolasRunner method) _all_efs (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute) _annotate (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) _artist_has_valid_attributes() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _BACKGROUND_NAME_MAPPING (in module pylbo.visualisation.utils) _byte_order (pylbo.utilities.datfiles.file_reader.LegolasFileReader attribute) _c_handler (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) _cbar_hspace (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) _check_autoscaling() (pylbo.visualisation.legend_handler.LegendHandler method) _check_data_is_present() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _check_deprecations() (in module pylbo.visualisation.spectra.spectrum_merged) _check_if_array() (pylbo.visualisation.modes.mode_figure.ModeFigure method) _check_if_number() (pylbo.visualisation.modes.mode_figure.ModeFigure method) _clear_contours() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) _clear_figure_and_selection() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _condition_to_make_transparent (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _continua (pylbo.data_containers.LegolasDataSet attribute) _continua_colors (pylbo.visualisation.continua.ContinuaHandler attribute) _continuity_balance() (in module pylbo.utilities.eq_balance) _contour_levels (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) _contour_recipe (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) _create_cbar_axes() (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) _create_figure_layout() (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) (pylbo.visualisation.modes.cylindrical_2d.CylindricalSlicePlot2D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) _def_ax (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) _def_handler (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) _DEFAULT_ZERO_TOL (in module pylbo.visualisation.continua) _derivative_from_gradient() (in module pylbo.utilities.eq_balance) _dict_phys (pylbo.gimli.Equilibrium attribute) (pylbo.gimli.equilibrium.Equilibrium attribute) _display_tooltip() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _draw_contours() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cylindrical_2d.CylindricalSlicePlot2D method) _draw_image() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cylindrical_2d.CylindricalSlicePlot2D method) _draw_resonances (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _drawn_items (pylbo.visualisation.legend_handler.LegendHandler attribute) _ef_ax (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) _ef_handler (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) _ef_name (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute) _ef_name_latex (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute) _ef_needs_retransform() (pylbo.visualisation.eigenfunctions.eigfunc_handler.EigenfunctionHandler method) _ef_subset_artists (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _energy_balance() (in module pylbo.utilities.eq_balance) _ensure_compatibility() (pylbo.data_containers.LegolasDataSet method) _ensure_first_frame_is_drawn() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) _ensure_nb_names_and_nb_runs_matches() (in module pylbo.automation.generator) _extract_solutions_from_roots() (in module pylbo.visualisation.continua) _figure_drawn (pylbo.visualisation.figure_window.FigureWindow attribute) (pylbo.visualisation.profiles.ContinuumProfile attribute) (pylbo.visualisation.profiles.EquilibriumBalance attribute) (pylbo.visualisation.profiles.EquilibriumProfile attribute) _force_balance_1() (in module pylbo.utilities.eq_balance) _force_balance_2() (in module pylbo.utilities.eq_balance) _force_balance_3() (in module pylbo.utilities.eq_balance) _function_names (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _generate_figure_id() (pylbo.visualisation.figure_window.FigureWindow method) _get_and_check_item() (pylbo.automation.generator.ParfileGenerator method) _get_background_name() (pylbo.visualisation.modes.mode_data.ModeVisualisationData method) _get_clicked_point_data() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _get_colors() (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot method) _get_combined_perturbation() (pylbo.gimli.Amrvac method) (pylbo.gimli.amrvac.Amrvac method) _get_conduction_prefactor() (in module pylbo.utilities.eq_balance) _get_conduction_prefactor_derivative() (in module pylbo.utilities.eq_balance) _get_derived_ef_names_and_offsets() (pylbo.utilities.datfiles.header.LegolasHeader method) _get_derived_eigenfunction_offsets() (pylbo.utilities.datfiles.header.LegolasHeader method) (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _get_ef_block_offsets() (pylbo.utilities.datfiles.header.LegolasHeader method) _get_ef_grid_offset() (pylbo.utilities.datfiles.header.LegolasHeader method) _get_ef_index() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) _get_ef_written_flags() (pylbo.utilities.datfiles.header.LegolasHeader method) (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _get_eigenfunction_like() (pylbo.data_containers.LegolasDataSet method) _get_eigenfunction_offsets() (pylbo.utilities.datfiles.header.LegolasHeader method) (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _get_eigenvector_offsets() (pylbo.utilities.datfiles.header.LegolasHeader method) _get_label() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _get_legend_handles() (in module pylbo.visualisation.legend_handler) _get_matrices_offsets() (pylbo.utilities.datfiles.header.LegolasHeader method) _get_normalisation() (pylbo.gimli.Amrvac method) (pylbo.gimli.amrvac.Amrvac method) _get_parallel_wave_vector() (in module pylbo.visualisation.continua) _get_residual_offsets() (pylbo.utilities.datfiles.header.LegolasHeader method) _get_resistive_thermal_continuum() (in module pylbo.visualisation.continua) _get_slow_and_thermal_continuum_coupled() (in module pylbo.visualisation.continua) _get_squared_Alfven_speed() (in module pylbo.visualisation.continua) _get_squared_isothermal_sound_speed() (in module pylbo.visualisation.continua) _get_squared_sound_speed() (in module pylbo.visualisation.continua) _get_textbox_axes_coords() (in module pylbo.visualisation.utils) _get_thermal_and_slow_continua() (in module pylbo.visualisation.continua) _get_thermal_continuum_analytical() (in module pylbo.visualisation.continua) _get_title() (pylbo.visualisation.eigenfunctions.eigfunc_handler.EigenfunctionHandler method) (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _get_total_perturbation() (pylbo.gimli.Amrvac method) (pylbo.gimli.amrvac.Amrvac method) _get_ydata() (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot method) _handle_entries_not_in_datfile_for_compatibility() (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _handle_expected_item_list() (in module pylbo.automation.generator) _induction_balance_1() (in module pylbo.utilities.eq_balance) _induction_balance_2() (in module pylbo.utilities.eq_balance) _init_worker() (pylbo.automation.runner.LegolasRunner static method) _interactive (pylbo.visualisation.spectra.spectrum_merged.MergedSpectrumPlot attribute) _invert_continua() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _is_nonadiabatic() (in module pylbo.visualisation.continua) _is_zero() (in module pylbo.visualisation.continua) _kwargs (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) (pylbo.visualisation.modes.temporal_1d.TemporalEvolutionPlot1D attribute) _legend_mapping (pylbo.visualisation.legend_handler.LegendHandler attribute) _log_assumed_thermal_continuum() (in module pylbo.visualisation.continua) _log_info() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) _log_slow_continuum_zero_warning() (in module pylbo.visualisation.continua) _make_visible_by_default (pylbo.visualisation.legend_handler.LegendHandler attribute) _mark_points_without_data_written() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _mpl_callbacks (pylbo.visualisation.figure_window.InteractiveFigureWindow attribute) _mpl_version (in module pylbo._version) _nb_prefix_digits (pylbo.automation.generator.ParfileGenerator attribute) _needs_continuity() (in module pylbo.utilities.eq_balance) _needs_force_balance_2() (in module pylbo.utilities.eq_balance) _needs_force_balance_3() (in module pylbo.utilities.eq_balance) _needs_induction_balance_1() (in module pylbo.utilities.eq_balance)

_needs_induction_balance_2() (in module pylbo.utilities.eq_balance) _parameters (pylbo.data_containers.LegolasDataSet attribute) _pbar (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute) _print_bg_info (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute) _print_nzeroes() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _print_selected_eigenvalues() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _read_basis_functions() (pylbo.utilities.datfiles.header.LegolasHeader method) _read_ef_subset_properties() (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _read_eigenfunction_like() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) _read_equilibrium_info() (pylbo.utilities.datfiles.header.LegolasHeader method) _read_equilibrium_names() (pylbo.utilities.datfiles.header.LegolasHeader method) (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _read_grid_info() (pylbo.utilities.datfiles.header.LegolasHeader method) _read_has_derived_efs() (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _read_has_eigenvectors() (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _read_has_residuals() (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _read_io_info() (pylbo.utilities.datfiles.header.LegolasHeader method) _read_legolas_version() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) _read_parameters() (pylbo.utilities.datfiles.header.LegolasHeader method) (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _read_physics_info() (pylbo.utilities.datfiles.header.LegolasHeader method) _read_physics_type_info() (pylbo.utilities.datfiles.header.LegolasHeader method) _read_solver_info() (pylbo.utilities.datfiles.header.LegolasHeader method) _read_units() (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) _read_units_info() (pylbo.utilities.datfiles.header.LegolasHeader method) _retransform (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _retransform_functions() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _sample_background_on_ef_grid() (pylbo.visualisation.modes.mode_data.ModeVisualisationData method) _save_eigenvalue_selection() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _save_selection_indices() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _select_next_function() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _select_previous_function() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _selected_idxs (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _selected_name_idx (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _selected_point_has_eigenfunctions() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _set_coordinate_data() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) _set_plot_properties() (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure method) _set_str_lengths() (pylbo.utilities.datfiles.header.LegolasHeader method) _set_t_txt() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) _set_test_eigenvalues() (pylbo.testing.FakeDataSet method) _set_test_equilibria() (pylbo.testing.FakeDataSet method) _show_ef_panel (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) _show_resonances() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _solutions (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) _solve_coupled_continuum_polynomial() (in module pylbo.visualisation.continua) _str_len (pylbo.utilities.datfiles.header.LegolasHeader attribute) _str_len_array (pylbo.utilities.datfiles.header.LegolasHeader attribute) _switch_real_and_imaginary_part() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _terminate_workers() (pylbo.automation.runner.LegolasRunner static method) _time (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) (pylbo.visualisation.modes.temporal_1d.TemporalEvolutionPlot1D attribute) _toggle_eigenfunction_subset_radius() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) _transparent_data (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _u1 (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) (pylbo.visualisation.modes.temporal_1d.TemporalEvolutionPlot1D attribute) (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute) _u2 (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) (pylbo.visualisation.modes.temporal_1d.TemporalEvolutionPlot1D attribute) (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute) _u3 (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) (pylbo.visualisation.modes.temporal_1d.TemporalEvolutionPlot1D attribute) (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute) _unmarked_alpha (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _update_contour_plot() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) _update_view() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) _update_view_clims() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) _use_contour_plot (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) _use_custom_axes() (pylbo.visualisation.spectra.spectrum_comparison.SpectrumComparisonPlot method) _use_legend (pylbo.visualisation.spectra.spectrum_merged.MergedSpectrumPlot attribute) _use_polar_axes (pylbo.visualisation.modes.cylindrical_2d.CylindricalSlicePlot2D attribute) _use_prefix (pylbo.automation.generator.ParfileGenerator attribute) _use_real_part (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) _use_residuals (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot attribute) _validate_and_set_dtype() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) _validate_basenames() (in module pylbo.automation.generator) _validate_complex_factor() (pylbo.visualisation.modes.mode_data.ModeVisualisationData method) _validate_config() (pylbo.gimli.Amrvac method) (pylbo.gimli.amrvac.Amrvac method) (pylbo.gimli.Legolas method) (pylbo.gimli.legolas.Legolas method) _validate_datfile() (pylbo.gimli.Amrvac method) (pylbo.gimli.amrvac.Amrvac method) _validate_executable() (in module pylbo.automation.runner) _validate_file() (in module pylbo.utilities.datfiles.file_loader) _validate_nb_cpus() (in module pylbo.automation.runner) _validate_output_dir() (in module pylbo.automation.generator) _validate_parfiles() (in module pylbo.automation.runner) _validate_slicing_axis() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) _validate_textbox_location() (in module pylbo.visualisation.utils) _validate_u2() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) _validate_u3() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) _validate_version() (pylbo._version.VersionHandler static method) _validate_xdata() (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot method) _version_number (pylbo._version.VersionHandler attribute) _view (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D attribute) (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) _vtk_byte_order (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute), [1] _vtk_dtype (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute), [1] _vtk_fmt (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute), [1] _w_pow (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot attribute) _write_vtk_auxiliary_coordinates() (pylbo.visualisation.modes.vtk_export.VTKCylindricalData method) (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) _write_vtk_coordinate_data() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) _write_vtk_header() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) _write_vtk_point_data_start() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) _write_vtk_scalar_field() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) _xdata (pylbo.testing.MockArtist attribute) _ydata (pylbo.testing.MockArtist attribute)

A

add() (pylbo.visualisation.legend_handler.LegendHandler method) add_axes_labels() (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) add_axis_label() (in module pylbo.visualisation.utils) add_background (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute), [1] add_continua() (pylbo.visualisation.spectra.spectrum_comparison.SpectrumComparisonPlot method) (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure method) (pylbo.visualisation.spectra.spectrum_merged.MergedSpectrumPlot method) (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot method) (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot method) add_eigenfunction_interface() (pylbo.visualisation.figure_window.InteractiveFigureWindow method) add_eigenfunctions() (pylbo.visualisation.spectra.spectrum_comparison.SpectrumComparisonPlot method) (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure method) (pylbo.visualisation.spectra.spectrum_merged.MergedSpectrumPlot method) (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot method) (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot method) add_k2k3_txt() (pylbo.visualisation.modes.mode_figure.ModeFigure method) add_omega_txt() (pylbo.visualisation.modes.mode_figure.ModeFigure method) add_pickradius_to_item() (in module pylbo.utilities.toolbox) add_spectrum() (pylbo.visualisation.spectra.spectrum_comparison.SpectrumComparisonPlot method) (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure method) (pylbo.visualisation.spectra.spectrum_merged.MergedSpectrumPlot method) (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot method) (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot method) add_subplot_axes() (pylbo.visualisation.figure_window.FigureWindow method) add_t_txt() (pylbo.visualisation.modes.mode_figure.ModeFigure method)

add_textbox_to_axes() (in module pylbo.visualisation.utils) add_to_stack() (pylbo.visualisation.figure_window.FigureWindow method) add_u2u3_txt() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) ALFVEN_MIN (in module pylbo.visualisation.continua) ALFVEN_PLUS (in module pylbo.visualisation.continua) ALIGN (in module pylbo.utilities.debug) alpha (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot attribute) alpha_hidden (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] alpha_point (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] alpha_region (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] Amrvac (class in pylbo.gimli) (class in pylbo.gimli.amrvac) autoscale (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] ax (pylbo.visualisation.matrices.MatrixFigure attribute) (pylbo.visualisation.modes.mode_figure.ModeFigure property) (pylbo.visualisation.profiles.ContinuumProfile attribute) (pylbo.visualisation.profiles.EquilibriumBalance attribute) (pylbo.visualisation.profiles.EquilibriumProfile attribute) (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute), [1] ax2 (pylbo.visualisation.matrices.MatrixFigure attribute) (pylbo.visualisation.profiles.EquilibriumProfile attribute) (pylbo.visualisation.spectra.spectrum_comparison.SpectrumComparisonPlot attribute), [1] axes (pylbo.testing.MockArtist attribute) (pylbo.visualisation.modes.mode_figure.ModeFigure attribute), [1] axis (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute)

B

background_name_to_latex() (in module pylbo.visualisation.utils) BackgroundNotPresent basenames (pylbo.automation.generator.ParfileGenerator attribute)

broadcast_to_3d() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) button (pylbo.testing.MockMouseEvent attribute) BYTE_ORDERS (in module pylbo.utilities.datfiles.istream_reader)

C

c_handler (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure property) calculate_continua() (in module pylbo.visualisation.continua) calculate_mode_solution() (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) CartesianSlicePlot2D (class in pylbo.visualisation.modes.cartesian_2d) CartesianSlicePlot3D (class in pylbo.visualisation.modes.cartesian_3d) cbar (pylbo.visualisation.modes.mode_figure.ModeFigure attribute), [1] cbar_ax (pylbo.visualisation.modes.mode_figure.ModeFigure attribute), [1] cgs (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) color (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) complex_factor (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute), [1] config (pylbo.gimli.Amrvac attribute) (pylbo.gimli.amrvac.Amrvac attribute) (pylbo.gimli.Legolas attribute) (pylbo.gimli.legolas.Legolas attribute) connect_callbacks() (pylbo.visualisation.figure_window.InteractiveFigureWindow method) container (pylbo.automation.generator.ParfileGenerator attribute)

continua (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) continua() (pylbo.data_containers.LegolasDataContainer method) CONTINUA_COLORS (in module pylbo.visualisation.continua) continua_colors (pylbo.visualisation.continua.ContinuaHandler property) continua_latex (pylbo.visualisation.continua.ContinuaHandler attribute) CONTINUA_NAMES (in module pylbo.visualisation.continua) continua_names (pylbo.visualisation.continua.ContinuaHandler attribute), [1] ContinuaHandler (class in pylbo.visualisation.continua) ContinuumProfile (class in pylbo.visualisation.profiles) count_zeroes() (in module pylbo.utilities.toolbox) create_animation() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) create_default_figure() (pylbo.visualisation.figure_window.FigureWindow method) create_file() (in module pylbo.gimli.utils) create_namelist_from_dict() (pylbo.automation.generator.ParfileGenerator method) custom_enumerate() (in module pylbo.utilities.toolbox) CylindricalSlicePlot2D (class in pylbo.visualisation.modes.cylindrical_2d) CylindricalSlicePlot3D (class in pylbo.visualisation.modes.cylindrical_3d)

D

data (pylbo.utilities.datfiles.header.LegolasHeader attribute) (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) (pylbo.visualisation.modes.mode_figure.ModeFigure attribute), [1] (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute) (pylbo.visualisation.profiles.ContinuumProfile attribute) (pylbo.visualisation.profiles.EquilibriumBalance attribute) (pylbo.visualisation.profiles.EquilibriumProfile attribute) (pylbo.visualisation.spectra.spectrum_merged.MergedSpectrumPlot attribute), [1] dataseries (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot attribute) dataset (pylbo.testing.MockArtist attribute) (pylbo.visualisation.matrices.MatrixFigure attribute) (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot attribute), [1] datasets (pylbo.data_containers.LegolasDataSeries attribute) datfile (pylbo.data_containers.LegolasDataSet attribute) (pylbo.utilities.datfiles.file_reader.LegolasFileReader attribute) derived_ef_names (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) derived_ef_names() (pylbo.data_containers.LegolasDataContainer method) dims (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute), [1] disable_logging() (in module pylbo) (in module pylbo.utilities.logger)

disconnect_callbacks() (pylbo.visualisation.figure_window.InteractiveFigureWindow method) DOPPLER (in module pylbo.visualisation.continua) draw() (pylbo.visualisation.figure_window.FigureWindow method) (pylbo.visualisation.matrices.MatrixFigure method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) (pylbo.visualisation.profiles.ContinuumProfile method) (pylbo.visualisation.profiles.EquilibriumBalance method) (pylbo.visualisation.profiles.EquilibriumProfile method) (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure method) draw_eigenfunction() (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) (pylbo.visualisation.modes.cylindrical_2d.CylindricalSlicePlot2D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) draw_resonances() (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot method) draw_solution() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) (pylbo.visualisation.modes.cylindrical_3d.CylindricalSlicePlot3D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) (pylbo.visualisation.modes.temporal_1d.TemporalEvolutionPlot1D method) draw_textboxes() (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) ds (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute), [1] DTYPES (in module pylbo.utilities.datfiles.istream_reader)

E

ef_ax (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure property) ef_data (pylbo.visualisation.modes.mode_figure.ModeFigure attribute), [1] ef_grid (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) ef_grid() (pylbo.data_containers.LegolasDataContainer method) ef_gridpoints (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) ef_handler (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure property) ef_name_to_latex() (in module pylbo.visualisation.utils) ef_names (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) ef_names() (pylbo.data_containers.LegolasDataContainer method) eigenfunction (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute), [1] EigenfunctionHandler (class in pylbo.visualisation.eigenfunctions.eigfunc_handler) EigenfunctionInterface (class in pylbo.visualisation.eigenfunctions.eigfunc_interface) EigenfunctionsNotPresent eigenvalues (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) EigenvectorsNotPresent

ensure_attr_set() (in module pylbo.visualisation.utils) ensure_dataseries() (in module pylbo.data_containers) ensure_dataset() (in module pylbo.data_containers) eq_balance (pylbo.visualisation.profiles.EquilibriumBalance attribute) eq_names (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) eq_type (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) equilibria (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) Equilibrium (class in pylbo.gimli) (class in pylbo.gimli.equilibrium) equilibrium (pylbo.gimli.Legolas attribute) (pylbo.gimli.legolas.Legolas attribute) EquilibriumBalance (class in pylbo.visualisation.profiles) EquilibriumProfile (class in pylbo.visualisation.profiles) executable (pylbo.automation.runner.LegolasRunner attribute) execute() (pylbo.automation.runner.LegolasRunner method) export_to_vtk() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method)

F

FakeDataSet (class in pylbo.testing) fig (pylbo.visualisation.figure_window.FigureWindow attribute), [1] (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) figsize (pylbo.visualisation.figure_window.FigureWindow attribute), [1] figure (pylbo.testing.MockArtist attribute) figure_id (pylbo.visualisation.figure_window.FigureWindow attribute), [1] figure_ids (pylbo.visualisation.figure_window.FigureWindow property) figure_stack (pylbo.visualisation.figure_window.FigureWindow attribute) FigureWindow (class in pylbo.visualisation.figure_window) file (pylbo.exceptions.BackgroundNotPresent attribute) (pylbo.exceptions.EigenvectorsNotPresent attribute) (pylbo.exceptions.InvalidLegolasFile attribute) (pylbo.exceptions.MatricesNotPresent attribute) (pylbo.exceptions.ParfileGenerationError attribute) (pylbo.exceptions.ResidualsNotPresent attribute)

filereader (pylbo.data_containers.LegolasDataSet attribute) find_resonance_location() (in module pylbo.utilities.toolbox) fkey (pylbo.gimli.equilibrium.Variables attribute), [1] (pylbo.gimli.Variables attribute), [1] forbidden_args (in module pylbo.visualisation.api) fortran_function() (in module pylbo.gimli.legolas)

G

gamma (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) gauss_gridpoints (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) generate_parfiles() (in module pylbo) (in module pylbo.automation.api) (pylbo.automation.generator.ParfileGenerator method) geometry (pylbo.data_containers.LegolasDataSeries attribute) (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) get() (pylbo.utilities.datfiles.header.LegolasHeader method) get_alfven_speed() (pylbo.data_containers.LegolasDataContainer method) (pylbo.data_containers.LegolasDataSeries method) (pylbo.data_containers.LegolasDataSet method) get_all_eigenfunction_names() (in module pylbo.utilities.toolbox) get_artist_data() (in module pylbo.visualisation.eigenfunctions.eigfunc_interface) get_axis_geometry() (in module pylbo.utilities.toolbox) get_background() (pylbo.visualisation.modes.mode_data.ModeVisualisationData method) get_coordinate_data() (pylbo.visualisation.modes.vtk_export.VTKCartesianData method) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData method) (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) get_debug_atmocurves() (in module pylbo.utilities.debug) get_debug_coolingcurves() (in module pylbo.utilities.debug) get_dependencies() (pylbo.gimli.Equilibrium method) (pylbo.gimli.equilibrium.Equilibrium method) get_doppler_shift() (in module pylbo.visualisation.continua) get_ef_name_latex() (pylbo.visualisation.modes.mode_data.ModeVisualisationData method) get_eigenfunctions() (pylbo.data_containers.LegolasDataSet method) get_eigenvalues_at_distance() (pylbo.data_containers.LegolasDataSet method) get_eigenvectors() (pylbo.data_containers.LegolasDataSet method) get_equilibrium_balance() (in module pylbo) (in module pylbo.utilities.eq_balance) get_equilibrium_parameters() (in module pylbo.gimli.utils) get_header() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) get_k0_squared() (pylbo.data_containers.LegolasDataContainer method) (pylbo.data_containers.LegolasDataSeries method) (pylbo.data_containers.LegolasDataSet method) get_magnetic_reynolds_nb() (pylbo.data_containers.LegolasDataContainer method) (pylbo.data_containers.LegolasDataSeries method) (pylbo.data_containers.LegolasDataSet method) get_matrix_A() (pylbo.data_containers.LegolasDataSet method)

get_matrix_B() (pylbo.data_containers.LegolasDataSet method) get_maximum_eigenvalue() (in module pylbo.utilities.toolbox) get_mode_solution() (pylbo.visualisation.modes.mode_data.ModeVisualisationData method) get_name_of_drawn_eigenfunction() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) get_nearest_eigenvalues() (pylbo.data_containers.LegolasDataSet method) get_omega_max() (pylbo.data_containers.LegolasDataSeries method) (pylbo.data_containers.LegolasDataSet method) get_physics() (pylbo.gimli.Equilibrium method) (pylbo.gimli.equilibrium.Equilibrium method) get_residuals() (pylbo.data_containers.LegolasDataSet method) get_reynolds_nb() (pylbo.data_containers.LegolasDataContainer method) (pylbo.data_containers.LegolasDataSeries method) (pylbo.data_containers.LegolasDataSet method) get_selected_idxs() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) get_solution() (pylbo.visualisation.modes.vtk_export.VTKDataExporter method) get_sound_speed() (pylbo.data_containers.LegolasDataContainer method) (pylbo.data_containers.LegolasDataSeries method) (pylbo.data_containers.LegolasDataSet method) get_squared_alfven_continuum() (in module pylbo.visualisation.continua) get_squared_slow_continuum() (in module pylbo.visualisation.continua) get_tube_speed() (pylbo.data_containers.LegolasDataContainer method) (pylbo.data_containers.LegolasDataSeries method) (pylbo.data_containers.LegolasDataSet method) get_values() (in module pylbo.utilities.toolbox) get_view_cbar_label() (pylbo.visualisation.modes.mode_figure.ModeFigure method) get_view_xlabel() (pylbo.visualisation.modes.cylindrical_2d.CylindricalSlicePlot2D method) (pylbo.visualisation.modes.cylindrical_3d.CylindricalSlicePlot3D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) get_view_ylabel() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cylindrical_2d.CylindricalSlicePlot2D method) (pylbo.visualisation.modes.cylindrical_3d.CylindricalSlicePlot3D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) (pylbo.visualisation.modes.temporal_1d.TemporalEvolutionPlot1D method) get_xdata() (pylbo.testing.MockArtist method) get_ydata() (pylbo.testing.MockArtist method) grid (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) grid_gauss (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) gridpoints (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute)

H

handler (pylbo.visualisation.profiles.ContinuumProfile attribute) has_background (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) has_background() (pylbo.data_containers.LegolasDataContainer method) has_derived_efs (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) has_derived_efs() (pylbo.data_containers.LegolasDataContainer method) has_ef_subset (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) has_ef_subset() (pylbo.data_containers.LegolasDataContainer method) has_efs (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property)

has_efs() (pylbo.data_containers.LegolasDataContainer method) has_eigenvectors (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) has_eigenvectors() (pylbo.data_containers.LegolasDataContainer method) has_matrices (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) has_matrices() (pylbo.data_containers.LegolasDataContainer method) has_residuals (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) has_residuals() (pylbo.data_containers.LegolasDataContainer method) has_valid_continua() (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure method) header (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute)

I

inaxes (pylbo.testing.MockMouseEvent attribute) ind (pylbo.testing.MockPickEvent attribute) init_logger() (in module pylbo.utilities.logger) interactive (pylbo.visualisation.legend_handler.LegendHandler attribute), [1]

InteractiveFigureWindow (class in pylbo.visualisation.figure_window) InvalidLegolasFile is_mhd (pylbo.data_containers.LegolasDataSet property) is_symbol_dependent() (in module pylbo.gimli.utils) is_sympy_number() (in module pylbo.gimli.utils)

K

k2 (pylbo.visualisation.modes.mode_data.ModeVisualisationData property) k2_str (pylbo.data_containers.LegolasDataSet property) k2k3_txt (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) k3 (pylbo.visualisation.modes.mode_data.ModeVisualisationData property) k3_str (pylbo.data_containers.LegolasDataSet property)

key (pylbo.exceptions.ParfileGenerationError attribute) KEYS_EXPECTED_AS_LIST (in module pylbo.automation.generator) kwargs (pylbo.visualisation.matrices.MatrixFigure attribute) (pylbo.visualisation.profiles.ContinuumProfile attribute) (pylbo.visualisation.profiles.EquilibriumBalance attribute) (pylbo.visualisation.profiles.EquilibriumProfile attribute)

L

leg_handle (pylbo.visualisation.profiles.EquilibriumProfile attribute) (pylbo.visualisation.spectra.spectrum_merged.MergedSpectrumPlot attribute), [1] legend (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] legend_handler (pylbo.visualisation.profiles.EquilibriumBalance attribute) legend_properties (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] LegendHandler (class in pylbo.visualisation.legend_handler) Legolas (class in pylbo.gimli) (class in pylbo.gimli.legolas) legolas_version (pylbo.data_containers.LegolasDataSet property) (pylbo.utilities.datfiles.header.LegolasHeader attribute) LegolasDataContainer (class in pylbo.data_containers) LegolasDataSeries (class in pylbo.data_containers) LegolasDataSet (class in pylbo.data_containers)

LegolasException LegolasFileReader (class in pylbo.utilities.datfiles.file_reader) LegolasHeader (class in pylbo.utilities.datfiles.header) LegolasLegacyHeader (class in pylbo.utilities.datfiles.header_legacy) LegolasRunner (class in pylbo.automation.runner) linewidth (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] load() (in module pylbo) (in module pylbo.utilities.datfiles.file_loader) load_logfile() (in module pylbo) (in module pylbo.utilities.datfiles.file_loader) load_pickled_dataseries() (in module pylbo.testing) load_series() (in module pylbo) (in module pylbo.utilities.datfiles.file_loader) log_deprecation_warning() (in module pylbo.deprecations)

M

make_layout_tight() (pylbo.visualisation.figure_window.FigureWindow method) make_legend_interactive() (pylbo.visualisation.figure_window.InteractiveFigureWindow method) make_legend_pickable() (pylbo.visualisation.legend_handler.LegendHandler method) marker (pylbo.visualisation.continua.ContinuaHandler attribute) (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot attribute) markersize (pylbo.visualisation.continua.ContinuaHandler attribute) (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot attribute) MatricesNotPresent matrix_gridpoints (pylbo.data_containers.LegolasDataSet attribute) (pylbo.testing.FakeDataSet attribute) MatrixFigure (class in pylbo.visualisation.matrices) MergedSpectrumPlot (class in pylbo.visualisation.spectra.spectrum_merged) MockArtist (class in pylbo.testing) MockKeyEvent (class in pylbo.testing) MockMouseEvent (class in pylbo.testing) MockPickEvent (class in pylbo.testing) ModeFigure (class in pylbo.visualisation.modes.mode_figure) ModeVisualisationData (class in pylbo.visualisation.modes.mode_data) module pylbo pylbo._version pylbo.automation pylbo.automation.api pylbo.automation.defaults pylbo.automation.generator pylbo.automation.runner pylbo.data_containers pylbo.deprecations pylbo.exceptions pylbo.gimli pylbo.gimli._version pylbo.gimli.amrvac pylbo.gimli.equilibrium pylbo.gimli.legolas pylbo.gimli.utils pylbo.testing pylbo.utilities pylbo.utilities.datfiles pylbo.utilities.datfiles.file_loader pylbo.utilities.datfiles.file_reader pylbo.utilities.datfiles.header pylbo.utilities.datfiles.header_legacy pylbo.utilities.datfiles.istream_reader pylbo.utilities.debug pylbo.utilities.eq_balance pylbo.utilities.logger pylbo.utilities.toolbox pylbo.visualisation pylbo.visualisation.api pylbo.visualisation.continua pylbo.visualisation.eigenfunctions pylbo.visualisation.eigenfunctions.eigfunc_handler pylbo.visualisation.eigenfunctions.eigfunc_interface pylbo.visualisation.figure_window pylbo.visualisation.legend_handler pylbo.visualisation.matrices pylbo.visualisation.modes pylbo.visualisation.modes.api pylbo.visualisation.modes.cartesian_2d pylbo.visualisation.modes.cartesian_3d pylbo.visualisation.modes.cylindrical_2d pylbo.visualisation.modes.cylindrical_3d pylbo.visualisation.modes.mode_data pylbo.visualisation.modes.mode_figure pylbo.visualisation.modes.temporal_1d pylbo.visualisation.modes.vtk_export pylbo.visualisation.profiles pylbo.visualisation.spectra pylbo.visualisation.spectra.spectrum_comparison pylbo.visualisation.spectra.spectrum_figure pylbo.visualisation.spectra.spectrum_merged pylbo.visualisation.spectra.spectrum_multi pylbo.visualisation.spectra.spectrum_single pylbo.visualisation.utils

msg (pylbo.exceptions.EigenfunctionsNotPresent attribute) MultiSpectrumPlot (class in pylbo.visualisation.spectra.spectrum_multi)

N

namelist_items (in module pylbo.automation.defaults) nb_cpus (pylbo.automation.runner.LegolasRunner attribute)

nb_runs (pylbo.automation.generator.ParfileGenerator attribute) (pylbo.exceptions.ParfileGenerationError attribute) NP_DTYPES (in module pylbo.utilities.datfiles.istream_reader)

O

omega (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute), [1] omega_txt (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) on_key_press() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) on_left_click() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method)

on_legend_pick() (pylbo.visualisation.legend_handler.LegendHandler method) on_point_pick() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) on_right_click() (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) output_dir (pylbo.automation.generator.ParfileGenerator attribute)

P

panel1 (pylbo.visualisation.spectra.spectrum_comparison.SpectrumComparisonPlot attribute), [1] panel2 (pylbo.visualisation.spectra.spectrum_comparison.SpectrumComparisonPlot attribute), [1] parameters (pylbo.data_containers.LegolasDataSeries property) (pylbo.data_containers.LegolasDataSet property) parameters() (pylbo.data_containers.LegolasDataContainer method) parfile() (pylbo.gimli.Legolas method) (pylbo.gimli.legolas.Legolas method) parfile_dict (pylbo.automation.generator.ParfileGenerator attribute) parfile_dir (pylbo.automation.runner.LegolasRunner attribute) ParfileGenerationError ParfileGenerator (class in pylbo.automation.generator) parfiles (pylbo.automation.generator.ParfileGenerator attribute) (pylbo.automation.runner.LegolasRunner attribute) parse() (pylbo._version.VersionHandler method) part_name (pylbo.visualisation.modes.mode_data.ModeVisualisationData property) pickle_dataseries_to_file() (in module pylbo.testing) pickradius (pylbo.visualisation.legend_handler.LegendHandler attribute), [1] plot_1d_temporal_evolution() (in module pylbo) (in module pylbo.visualisation.modes.api) plot_2d_slice() (in module pylbo) (in module pylbo.visualisation.modes.api) plot_3d_slice() (in module pylbo) (in module pylbo.visualisation.modes.api) plot_continua() (in module pylbo) (in module pylbo.visualisation.api) plot_debug_atmocurves() (in module pylbo.utilities.debug) plot_debug_coolingcurves() (in module pylbo.utilities.debug) plot_equilibrium() (in module pylbo) (in module pylbo.visualisation.api) plot_equilibrium_balance() (in module pylbo) (in module pylbo.visualisation.api) plot_matrices() (in module pylbo) (in module pylbo.visualisation.api) plot_merged_spectrum() (in module pylbo) (in module pylbo.visualisation.api) plot_props (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute) plot_spectrum() (in module pylbo) (in module pylbo.visualisation.api) plot_spectrum_comparison() (in module pylbo) (in module pylbo.visualisation.api) plot_spectrum_multi() (in module pylbo) (in module pylbo.visualisation.api) prepare_legolas_data() (pylbo.gimli.Amrvac method) (pylbo.gimli.amrvac.Amrvac method) prepare_vtk_export() (in module pylbo) (in module pylbo.visualisation.modes.api) pylbo module pylbo._version module pylbo.automation module pylbo.automation.api module pylbo.automation.defaults module pylbo.automation.generator module pylbo.automation.runner module pylbo.data_containers module pylbo.deprecations module pylbo.exceptions module pylbo.gimli module pylbo.gimli._version module pylbo.gimli.amrvac module pylbo.gimli.equilibrium module pylbo.gimli.legolas module pylbo.gimli.utils module

pylbo.testing module pylbo.utilities module pylbo.utilities.datfiles module pylbo.utilities.datfiles.file_loader module pylbo.utilities.datfiles.file_reader module pylbo.utilities.datfiles.header module pylbo.utilities.datfiles.header_legacy module pylbo.utilities.datfiles.istream_reader module pylbo.utilities.debug module pylbo.utilities.eq_balance module pylbo.utilities.logger module pylbo.utilities.toolbox module pylbo.visualisation module pylbo.visualisation.api module pylbo.visualisation.continua module pylbo.visualisation.eigenfunctions module pylbo.visualisation.eigenfunctions.eigfunc_handler module pylbo.visualisation.eigenfunctions.eigfunc_interface module pylbo.visualisation.figure_window module pylbo.visualisation.legend_handler module pylbo.visualisation.matrices module pylbo.visualisation.modes module pylbo.visualisation.modes.api module pylbo.visualisation.modes.cartesian_2d module pylbo.visualisation.modes.cartesian_3d module pylbo.visualisation.modes.cylindrical_2d module pylbo.visualisation.modes.cylindrical_3d module pylbo.visualisation.modes.mode_data module pylbo.visualisation.modes.mode_figure module pylbo.visualisation.modes.temporal_1d module pylbo.visualisation.modes.vtk_export module pylbo.visualisation.profiles module pylbo.visualisation.spectra module pylbo.visualisation.spectra.spectrum_comparison module pylbo.visualisation.spectra.spectrum_figure module pylbo.visualisation.spectra.spectrum_merged module pylbo.visualisation.spectra.spectrum_multi module pylbo.visualisation.spectra.spectrum_single module pylbo.visualisation.utils module pylboLogger (in module pylbo.utilities.logger)

R

read_boolean_from_istream() (in module pylbo.utilities.datfiles.istream_reader) read_complex_from_istream() (in module pylbo.utilities.datfiles.istream_reader) read_data_offsets() (pylbo.utilities.datfiles.header.LegolasHeader method) (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) read_derived_eigenfunction() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_ef_grid() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_eigenfunction() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_eigenvalues() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_eigenvectors() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_equilibrium_arrays() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_float_from_istream() (in module pylbo.utilities.datfiles.istream_reader) read_gaussian_grid() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_grid() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_header_data() (pylbo.utilities.datfiles.header.LegolasHeader method) (pylbo.utilities.datfiles.header_legacy.LegolasLegacyHeader method) read_int_from_istream() (in module pylbo.utilities.datfiles.istream_reader)

read_matrix_A() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_matrix_B() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_mixed_from_istream() (in module pylbo.utilities.datfiles.istream_reader) read_residuals() (pylbo.utilities.datfiles.file_reader.LegolasFileReader method) read_string_from_istream() (in module pylbo.utilities.datfiles.istream_reader) redraw() (pylbo.visualisation.figure_window.FigureWindow method) (pylbo.visualisation.figure_window.InteractiveFigureWindow method) reduce_to_unique_array() (in module pylbo.utilities.toolbox) refresh_plot() (in module pylbo.visualisation.utils) remove_parfiles (pylbo.automation.runner.LegolasRunner attribute) requires_version() (in module pylbo.utilities.datfiles.istream_reader) ResidualsNotPresent rho0 (pylbo.gimli.Equilibrium attribute), [1] (pylbo.gimli.equilibrium.Equilibrium attribute), [1] run_legolas() (in module pylbo) (in module pylbo.automation.api)

S

save() (pylbo.visualisation.figure_window.FigureWindow method) savedir (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) scale_factor (pylbo.data_containers.LegolasDataSet attribute) (pylbo.testing.FakeDataSet attribute) select_files() (in module pylbo.utilities.datfiles.file_loader) set_contours() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) set_loglevel() (in module pylbo) (in module pylbo.utilities.logger) set_plot_arrays() (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D method) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D method) (pylbo.visualisation.modes.cylindrical_2d.CylindricalSlicePlot2D method) (pylbo.visualisation.modes.cylindrical_3d.CylindricalSlicePlot3D method) (pylbo.visualisation.modes.mode_figure.ModeFigure method) (pylbo.visualisation.modes.temporal_1d.TemporalEvolutionPlot1D method) set_x_scaling() (pylbo.visualisation.spectra.spectrum_comparison.SpectrumComparisonPlot method) (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure method) (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot method) set_y_scaling() (pylbo.visualisation.spectra.spectrum_comparison.SpectrumComparisonPlot method) (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure method) (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot method)

show() (pylbo.visualisation.figure_window.FigureWindow method) SingleSpectrumPlot (class in pylbo.visualisation.spectra.spectrum_single) SIZE_BOOL (in module pylbo.utilities.datfiles.istream_reader) SIZE_CHAR (in module pylbo.utilities.datfiles.istream_reader) SIZE_COMPLEX (in module pylbo.utilities.datfiles.istream_reader) SIZE_DOUBLE (in module pylbo.utilities.datfiles.istream_reader) SIZE_INT (in module pylbo.utilities.datfiles.istream_reader) slicing_axis (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) SLOW_MIN (in module pylbo.visualisation.continua) SLOW_PLUS (in module pylbo.visualisation.continua) solution_shape (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) solutions (pylbo.visualisation.modes.mode_figure.ModeFigure property) solve_cubic_exact() (in module pylbo.utilities.toolbox) spec_axis (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface attribute) SpectrumComparisonPlot (class in pylbo.visualisation.spectra.spectrum_comparison) SpectrumFigure (class in pylbo.visualisation.spectra.spectrum_figure)

T

T0 (pylbo.gimli.Equilibrium attribute), [1] (pylbo.gimli.equilibrium.Equilibrium attribute), [1] t_txt (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) TemporalEvolutionPlot1D (class in pylbo.visualisation.modes.temporal_1d)

THERMAL (in module pylbo.visualisation.continua) time_data (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) timethis() (in module pylbo.utilities.toolbox) transform_to_list() (in module pylbo.utilities.toolbox) transform_to_numpy() (in module pylbo.utilities.toolbox)

U

u1_data (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute) u1_str (pylbo.data_containers.LegolasDataSet property) u2_data (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute) u2_str (pylbo.data_containers.LegolasDataSet property) u2u3_txt (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) u3_data (pylbo.visualisation.modes.mode_figure.ModeFigure attribute) (pylbo.visualisation.modes.vtk_export.VTKCartesianData attribute) (pylbo.visualisation.modes.vtk_export.VTKCylindricalData attribute) (pylbo.visualisation.modes.vtk_export.VTKDataExporter attribute)

u3_str (pylbo.data_containers.LegolasDataSet property) unable_to_do (pylbo.exceptions.BackgroundNotPresent attribute) units (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) update_colorbar (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) update_plot() (pylbo.visualisation.eigenfunctions.eigfunc_handler.EigenfunctionHandler method) (pylbo.visualisation.eigenfunctions.eigfunc_interface.EigenfunctionInterface method) use_real_part (pylbo.visualisation.modes.mode_data.ModeVisualisationData attribute), [1] use_real_parts (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot attribute) use_squared_omega (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot attribute) user_module() (pylbo.gimli.Legolas method) (pylbo.gimli.legolas.Legolas method)

V

validate_ef_name() (in module pylbo.visualisation.utils) validate_output_dir() (in module pylbo.gimli.utils) Variables (class in pylbo.gimli) (class in pylbo.gimli.equilibrium) variables (pylbo.gimli.Equilibrium attribute), [1] (pylbo.gimli.equilibrium.Equilibrium attribute), [1] VersionHandler (class in pylbo._version) vmax (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D attribute) (pylbo.visualisation.modes.cylindrical_3d.CylindricalSlicePlot3D attribute)

vmin (pylbo.visualisation.modes.cartesian_2d.CartesianSlicePlot2D attribute) (pylbo.visualisation.modes.cartesian_3d.CartesianSlicePlot3D attribute) (pylbo.visualisation.modes.cylindrical_3d.CylindricalSlicePlot3D attribute) VTKCartesianData (class in pylbo.visualisation.modes.vtk_export) VTKCylindricalData (class in pylbo.visualisation.modes.vtk_export) VTKDataExporter (class in pylbo.visualisation.modes.vtk_export)

W

w_imag (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot attribute) w_real (pylbo.visualisation.spectra.spectrum_single.SingleSpectrumPlot attribute) write_equilibrium_functions() (in module pylbo.gimli.legolas)

write_pad() (in module pylbo.gimli.utils) write_physics_calls() (in module pylbo.gimli.legolas) write_physics_functions() (in module pylbo.gimli.legolas)

X

x_end (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) x_scaling (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute), [1] (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot attribute)

x_start (pylbo.data_containers.LegolasDataSet attribute), [1] (pylbo.testing.FakeDataSet attribute) xdata (pylbo.testing.MockMouseEvent attribute) (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot attribute)

Y

y_scaling (pylbo.visualisation.spectra.spectrum_figure.SpectrumFigure attribute), [1] (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot attribute)

ydata (pylbo.testing.MockMouseEvent attribute) (pylbo.visualisation.spectra.spectrum_multi.MultiSpectrumPlot attribute)